funseq

Online Tool (testing ...) Input file: (this pipeline is for hg19; SNV only)

FunSEQ takes BED or VCF files as input. Sample input file

With multiple files, FunSEQ also do recurrent analysis.

Output format: MAF:

Minor allele frequency threshold to filter 1KG phaseI SNVs (value 0~1). If MAF=0, all variants in 1KG will be filtered out.

* For germline or recurrent analysis, we suggest downloading the software.

The program needs a few minutes.

You can remain on this page and wait for the result, or you can copy your
JOB ID 2020223142118744502 to get your results in Result page.

FunSeq